Sooo update on this issue. I moved all my external code for google sheet & Twilio messaging into the script file thinking that would solve the issue.
And it didn’t, same error with the same naming convention. All the modules that I need have a lot of init.py files so I wonder if Apple doesn’t allow files with that name specifically or what.
So as a test I took out those files and just tried to upload my Pythonista code and it worked flawlessly. At least I pinpointed exactly what files are causing this error, but it’s sad because those modules are important for the functionality of my app.